Detailed information of SNP:
|
SNP ID:
sf0102594003(Gbrowse)
Chromosome: chr01 Position: 2594003 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1163 | 96.99% | 3.01% |
| All Indica | 684 | 97.66% | 2.34% |
| All Japonica | 379 | 96.04% | 3.96% |
| Aus | 48 | 91.67% | 8.33% |
| Indica I | 346 | 99.71% | 0.29% |
| Indica II | 161 | 95.65% | 4.35% |
| Indica Intermediate | 177 | 95.48% | 4.52% |
| Temperate Japonica | 223 | 94.17% | 5.83% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102594003 | G->A | INTERGENIC | None |