Detailed information of SNP:
|
SNP ID:
sf0102656456(Gbrowse)
Chromosome: chr01 Position: 2656456 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 66.78% | 33.22% |
| All Indica | 798 | 47.99% | 52.01% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 69.87% | 30.13% |
| Indica II | 213 | 14.08% | 85.92% |
| Indica Intermediate | 210 | 43.33% | 56.67% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102656456 | C->T | INTERGENIC | None |