Detailed information of SNP:
|
SNP ID:
sf0102686164(Gbrowse)
Chromosome: chr01 Position: 2686164 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1326 | 79.11% | 20.89% |
| All Indica | 741 | 90.55% | 9.45% |
| All Japonica | 494 | 62.35% | 37.65% |
| Aus | 44 | 86.36% | 13.64% |
| Indica I | 371 | 91.64% | 8.36% |
| Indica II | 168 | 82.14% | 17.86% |
| Indica Intermediate | 202 | 95.54% | 4.46% |
| Temperate Japonica | 335 | 52.54% | 47.46% |
| Tropical Japonica | 91 | 94.51% | 5.49% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 33 | 84.85% | 15.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102686164 | G->C | LOC_Os01g05630(LOC_Os01g05630.1) | Synonymous |