Detailed information of SNP:
|
SNP ID:
sf0102709977(Gbrowse)
Chromosome: chr01 Position: 2709977 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 69.84% | 30.16% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 48.89% | 51.11% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 31.34% | 68.66% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102709977 | A->G | LOC_Os01g05670(LOC_Os01g05670.1) | INTRON |