Detailed information of SNP:
|
SNP ID:
sf0102740030(Gbrowse)
Chromosome: chr01 Position: 2740030 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 66.15% | 33.85% |
| All Indica | 798 | 46.87% | 53.13% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 67.65% | 32.35% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 211 | 40.76% | 59.24% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102740030 | T->C | INTERGENIC | None |