Detailed information of SNP:
|
SNP ID:
sf0102740082(Gbrowse)
Chromosome: chr01 Position: 2740082 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 80.38% | 19.62% |
| All Indica | 732 | 83.20% | 16.80% |
| All Japonica | 496 | 74.40% | 25.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 351 | 93.16% | 6.84% |
| Indica II | 206 | 66.02% | 33.98% |
| Indica Intermediate | 175 | 83.43% | 16.57% |
| Temperate Japonica | 334 | 86.53% | 13.47% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102740082 | C->T | INTERGENIC | None |