Detailed information of SNP:
SNP ID:
sf0102750912(Gbrowse)
Chromosome: chr01 Position: 2750912 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1413 | 61.15% | 38.85% |
All Indica | 795 | 46.67% | 53.33% |
All Japonica | 497 | 83.50% | 16.50% |
Aus | 67 | 68.66% | 31.34% |
Indica I | 374 | 66.84% | 33.16% |
Indica II | 212 | 17.45% | 82.55% |
Indica Intermediate | 209 | 40.19% | 59.81% |
Temperate Japonica | 335 | 77.31% | 22.69% |
Tropical Japonica | 94 | 95.74% | 4.26% |
Japonica Intermediate | 68 | 97.06% | 2.94% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0102750912 | C->T | INTERGENIC | None |