Detailed information of SNP:



SNP ID: sf0102750912(Gbrowse)

Chromosome: chr01

Position: 2750912
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1413 61.15% 38.85%
All Indica795 46.67% 53.33%
All Japonica497 83.50% 16.50%
Aus67 68.66% 31.34%
Indica I374 66.84% 33.16%
Indica II212 17.45% 82.55%
Indica Intermediate209 40.19% 59.81%
Temperate Japonica335 77.31% 22.69%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 92.86% 7.14%
Intermediate40 47.50% 52.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0102750912 C->T INTERGENIC None