Detailed information of SNP:
|
SNP ID:
sf0102764446(Gbrowse)
Chromosome: chr01 Position: 2764446 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 59.59% | 40.41% |
| All Indica | 781 | 52.24% | 47.76% |
| All Japonica | 494 | 66.19% | 33.81% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 365 | 35.07% | 64.93% |
| Indica II | 207 | 77.78% | 22.22% |
| Indica Intermediate | 209 | 56.94% | 43.06% |
| Temperate Japonica | 335 | 85.37% | 14.63% |
| Tropical Japonica | 91 | 12.09% | 87.91% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102764446 | C->T | INTERGENIC | None |