Detailed information of SNP:



SNP ID: sf0102764446(Gbrowse)

Chromosome: chr01

Position: 2764446
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1398 59.59% 40.41%
All Indica781 52.24% 47.76%
All Japonica494 66.19% 33.81%
Aus67 94.03% 5.97%
Indica I365 35.07% 64.93%
Indica II207 77.78% 22.22%
Indica Intermediate209 56.94% 43.06%
Temperate Japonica335 85.37% 14.63%
Tropical Japonica91 12.09% 87.91%
Japonica Intermediate68 44.12% 55.88%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 50.00% 50.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0102764446 C->T INTERGENIC None