Detailed information of SNP:
|
SNP ID:
sf0102808057(Gbrowse)
Chromosome: chr01 Position: 2808057 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.94% | 45.06% |
| All Indica | 799 | 55.32% | 44.68% |
| All Japonica | 496 | 47.58% | 52.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 72.00% | 28.00% |
| Indica II | 213 | 30.05% | 69.95% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 29.25% | 70.75% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102808057 | A->G | INTERGENIC | None |