Detailed information of SNP:
|
SNP ID:
sf0102819770(Gbrowse)
Chromosome: chr01 Position: 2819770 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 52.12% | 47.88% |
| All Indica | 796 | 53.64% | 46.36% |
| All Japonica | 495 | 46.87% | 53.13% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 373 | 71.05% | 28.95% |
| Indica II | 212 | 27.83% | 72.17% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 334 | 28.74% | 71.26% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102819770 | G->C | LOC_Os01g05900(LOC_Os01g05900.1) | INTRON |