Detailed information of SNP:
|
SNP ID:
sf0102820219(Gbrowse)
Chromosome: chr01 Position: 2820219 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 82.91% | 17.09% |
| All Indica | 770 | 82.99% | 17.01% |
| All Japonica | 479 | 81.21% | 18.79% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 88.35% | 11.65% |
| Indica II | 206 | 80.58% | 19.42% |
| Indica Intermediate | 195 | 75.38% | 24.62% |
| Temperate Japonica | 329 | 91.79% | 8.21% |
| Tropical Japonica | 87 | 40.23% | 59.77% |
| Japonica Intermediate | 63 | 82.54% | 17.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102820219 | C->T | LOC_Os01g05900(LOC_Os01g05900.1) | INTRON |