Detailed information of SNP:
|
SNP ID:
sf0102858069(Gbrowse)
Chromosome: chr01 Position: 2858069 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 55.05% | 44.95% |
| All Indica | 798 | 81.70% | 18.30% |
| All Japonica | 496 | 20.97% | 79.03% |
| Aus | 65 | 7.69% | 92.31% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 210 | 70.95% | 29.05% |
| Temperate Japonica | 334 | 17.66% | 82.34% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102858069 | A->G | INTERGENIC | None |