Detailed information of SNP:
|
SNP ID:
sf0102963097(Gbrowse)
Chromosome: chr01 Position: 2963097 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 94.83% | 5.17% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 451 | 85.59% | 14.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 294 | 80.61% | 19.39% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102963097 | C->A | LOC_Os01g06240(LOC_Os01g06240.1) | Non-Synonymous SNP |