Detailed information of SNP:
|
SNP ID:
sf0103006968(Gbrowse)
Chromosome: chr01 Position: 3006968 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1342 | 95.75% | 4.25% |
| All Indica | 731 | 94.66% | 5.34% |
| All Japonica | 489 | 96.52% | 3.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 95.13% | 4.87% |
| Indica II | 189 | 95.77% | 4.23% |
| Indica Intermediate | 193 | 92.75% | 7.25% |
| Temperate Japonica | 333 | 95.80% | 4.20% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103006968 | A->G | INTERGENIC | None |