Detailed information of SNP:
|
SNP ID:
sf0103030868(Gbrowse)
Chromosome: chr01 Position: 3030868 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.55% | 26.45% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 30.99% | 69.01% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 33.13% | 66.87% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103030868 | G->A | LOC_Os01g06400(LOC_Os01g06400.1) | Non-Synonymous SNP |