Detailed information of SNP:
|
SNP ID:
sf0103052858(Gbrowse)
Chromosome: chr01 Position: 3052858 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1327 | 98.87% | 1.13% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 413 | 98.31% | 1.69% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 260 | 98.08% | 1.92% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103052858 | C->T | INTERGENIC | None |