Detailed information of SNP:
|
SNP ID:
sf0103092065(Gbrowse)
Chromosome: chr01 Position: 3092065 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 91.01% | 8.99% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 481 | 79.21% | 20.79% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 321 | 73.83% | 26.17% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103092065 | A->G | INTERGENIC | None |