Detailed information of SNP:
|
SNP ID:
sf0103115049(Gbrowse)
Chromosome: chr01 Position: 3115049 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 81.46% | 18.54% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 452 | 49.78% | 50.22% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 294 | 30.95% | 69.05% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 65 | 67.69% | 32.31% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103115049 | A->G | INTERGENIC | None |