Detailed information of SNP:
|
SNP ID:
sf0103131262(Gbrowse)
Chromosome: chr01 Position: 3131262 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.49% | 20.51% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 63.38% | 36.62% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 76.42% | 23.58% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103131262 | A->G | INTERGENIC | None |