Detailed information of SNP:
|
SNP ID:
sf0103142509(Gbrowse)
Chromosome: chr01 Position: 3142509 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 56.55% | 43.45% |
| All Indica | 780 | 89.36% | 10.64% |
| All Japonica | 496 | 13.31% | 86.69% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 365 | 90.96% | 9.04% |
| Indica II | 209 | 84.69% | 15.31% |
| Indica Intermediate | 206 | 91.26% | 8.74% |
| Temperate Japonica | 334 | 14.07% | 85.93% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103142509 | G->A | INTERGENIC | None |