Detailed information of SNP:
|
SNP ID:
sf0103147298(Gbrowse)
Chromosome: chr01 Position: 3147298 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 75.41% | 24.59% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 485 | 30.10% | 69.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 30.15% | 69.85% |
| Tropical Japonica | 83 | 33.73% | 66.27% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103147298 | T->C | LOC_Os01g06680(LOC_Os01g06680.1) | Synonymous |