Detailed information of SNP:
|
SNP ID:
sf0103157009(Gbrowse)
Chromosome: chr01 Position: 3157009 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 93.03% | 6.97% |
| All Indica | 770 | 93.38% | 6.62% |
| All Japonica | 489 | 92.02% | 7.98% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 364 | 94.78% | 5.22% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 200 | 93.00% | 7.00% |
| Temperate Japonica | 331 | 94.26% | 5.74% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 65 | 75.38% | 24.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103157009 | G->A | LOC_Os01g06690(LOC_Os01g06690.1) | Non-Synonymous SNP |