Detailed information of SNP:
|
SNP ID:
sf0103173854(Gbrowse)
Chromosome: chr01 Position: 3173854 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 86.59% | 13.41% |
| All Indica | 795 | 86.04% | 13.96% |
| All Japonica | 465 | 85.81% | 14.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 327 | 99.69% | 0.31% |
| Tropical Japonica | 80 | 22.50% | 77.50% |
| Japonica Intermediate | 58 | 94.83% | 5.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103173854 | T->C | INTERGENIC | None |