Detailed information of SNP:
|
SNP ID:
sf0103184620(Gbrowse)
Chromosome: chr01 Position: 3184620 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.64% | 39.36% |
| All Indica | 795 | 96.35% | 3.65% |
| All Japonica | 497 | 13.48% | 86.52% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 14.93% | 85.07% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103184620 | C->T | INTERGENIC | None |