Detailed information of SNP:
|
SNP ID:
sf0103184888(Gbrowse)
Chromosome: chr01 Position: 3184888 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 60.88% | 39.12% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 495 | 13.54% | 86.46% |
| Aus | 64 | 4.69% | 95.31% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 14.67% | 85.33% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 11 | 9.09% | 90.91% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103184888 | G->C | INTERGENIC | None |