Detailed information of SNP:
|
SNP ID:
sf0103187289(Gbrowse)
Chromosome: chr01 Position: 3187289 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 69.24% | 30.76% |
| All Indica | 775 | 94.32% | 5.68% |
| All Japonica | 490 | 25.31% | 74.69% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 362 | 94.75% | 5.25% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 332 | 28.61% | 71.39% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 65 | 24.62% | 75.38% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103187289 | T->C | INTERGENIC | None |