Detailed information of SNP:



SNP ID: sf0103187464(Gbrowse)

Chromosome: chr01

Position: 3187464
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1393 67.98% 32.02%
All Indica779 90.76% 9.24%
All Japonica493 27.59% 72.41%
Aus66 90.91% 9.09%
Indica I360 91.94% 8.06%
Indica II211 86.73% 13.27%
Indica Intermediate208 92.79% 7.21%
Temperate Japonica332 31.63% 68.37%
Tropical Japonica93 12.90% 87.10%
Japonica Intermediate68 27.94% 72.06%
Group VI/Aromatic13 92.31% 7.69%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0103187464 A->G INTERGENIC None