Detailed information of SNP:
|
SNP ID:
sf0103187464(Gbrowse)
Chromosome: chr01 Position: 3187464 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 67.98% | 32.02% |
| All Indica | 779 | 90.76% | 9.24% |
| All Japonica | 493 | 27.59% | 72.41% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 360 | 91.94% | 8.06% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 332 | 31.63% | 68.37% |
| Tropical Japonica | 93 | 12.90% | 87.10% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103187464 | A->G | INTERGENIC | None |