Detailed information of SNP:
|
SNP ID:
sf0103190059(Gbrowse)
Chromosome: chr01 Position: 3190059 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 56.19% | 43.81% |
| All Indica | 794 | 73.55% | 26.45% |
| All Japonica | 496 | 36.69% | 63.31% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 70.67% | 29.33% |
| Indica II | 208 | 73.56% | 26.44% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103190059 | G->C | INTERGENIC | None |