Detailed information of SNP:
|
SNP ID:
sf0103213478(Gbrowse)
Chromosome: chr01 Position: 3213478 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1191 | 56.93% | 43.07% |
| All Indica | 603 | 26.87% | 73.13% |
| All Japonica | 473 | 89.64% | 10.36% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 264 | 31.44% | 68.56% |
| Indica II | 177 | 18.08% | 81.92% |
| Indica Intermediate | 162 | 29.01% | 70.99% |
| Temperate Japonica | 320 | 89.38% | 10.62% |
| Tropical Japonica | 89 | 87.64% | 12.36% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 36 | 47.22% | 52.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103213478 | A->G | LOC_Os01g06770(LOC_Os01g06770.1) | Synonymous |