Detailed information of SNP:
|
SNP ID:
sf0103220429(Gbrowse)
Chromosome: chr01 Position: 3220429 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 62.77% | 37.23% |
| All Indica | 796 | 97.36% | 2.64% |
| All Japonica | 495 | 16.57% | 83.43% |
| Aus | 64 | 3.12% | 96.88% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 16.72% | 83.28% |
| Tropical Japonica | 92 | 20.65% | 79.35% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103220429 | G->A | INTERGENIC | None |