Detailed information of SNP:
|
SNP ID:
sf0103229699(Gbrowse)
Chromosome: chr01 Position: 3229699 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1247 | 74.02% | 25.98% |
| All Indica | 649 | 55.47% | 44.53% |
| All Japonica | 483 | 93.58% | 6.42% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 308 | 51.62% | 48.38% |
| Indica II | 170 | 54.71% | 45.29% |
| Indica Intermediate | 171 | 63.16% | 36.84% |
| Temperate Japonica | 323 | 93.19% | 6.81% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 91.43% | 8.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103229699 | C->T | INTERGENIC | None |