Detailed information of SNP:
|
SNP ID:
sf0103242306(Gbrowse)
Chromosome: chr01 Position: 3242306 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 78.82% | 21.18% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 491 | 43.58% | 56.42% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 48.05% | 51.95% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 65 | 43.08% | 56.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103242306 | A->G | LOC_Os01g06836(LOC_Os01g06836.1) | Synonymous |