Detailed information of SNP:
|
SNP ID:
sf0103242562(Gbrowse)
Chromosome: chr01 Position: 3242562 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 77.36% | 22.64% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 496 | 40.73% | 59.27% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 48.06% | 51.94% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103242562 | T->C | INTERGENIC | None |