Detailed information of SNP:
|
SNP ID:
sf0103246262(Gbrowse)
Chromosome: chr01 Position: 3246262 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 96.83% | 3.17% |
| All Indica | 775 | 95.48% | 4.52% |
| All Japonica | 489 | 98.57% | 1.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 96.09% | 3.91% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 93.33% | 6.67% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103246262 | G->A | LOC_Os01g06852(LOC_Os01g06852.1) | INTRON |