Detailed information of SNP:
|
SNP ID:
sf0103251222(Gbrowse)
Chromosome: chr01 Position: 3251222 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.44% | 37.56% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103251222 | C->T | LOC_Os01g06870(LOC_Os01g06870.1) | Non-Synonymous SNP |