Detailed information of SNP:



SNP ID: sf0103255578(Gbrowse)

Chromosome: chr01

Position: 3255578
Major allele: T

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1392 56.39% 43.61%
All Indica784 81.76% 18.24%
All Japonica487 22.79% 77.21%
Aus66 13.64% 86.36%
Indica I368 81.52% 18.48%
Indica II211 83.89% 16.11%
Indica Intermediate205 80.00% 20.00%
Temperate Japonica328 25.30% 74.70%
Tropical Japonica93 12.90% 87.10%
Japonica Intermediate66 24.24% 75.76%
Group VI/Aromatic14 0.00% 100.00%
Intermediate41 58.54% 41.46%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0103255578 G->T INTERGENIC None