Detailed information of SNP:
|
SNP ID:
sf0103256998(Gbrowse)
Chromosome: chr01 Position: 3256998 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 88.67% | 11.33% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 455 | 66.15% | 33.85% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 52.17% | 47.83% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 62 | 83.87% | 16.13% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103256998 | C->A | LOC_Os01g06882(LOC_Os01g06882.1) | UTR_5_PRIME |