Detailed information of SNP:
|
SNP ID:
sf0103289887(Gbrowse)
Chromosome: chr01 Position: 3289887 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 81.85% | 18.15% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 472 | 49.36% | 50.64% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 321 | 47.35% | 52.65% |
| Tropical Japonica | 88 | 55.68% | 44.32% |
| Japonica Intermediate | 63 | 50.79% | 49.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103289887 | T->A | LOC_Os01g06960(LOC_Os01g06960.1) | INTRON |