Detailed information of SNP:
|
SNP ID:
sf0103299358(Gbrowse)
Chromosome: chr01 Position: 3299358 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 81.03% | 18.97% |
| All Indica | 795 | 91.45% | 8.55% |
| All Japonica | 495 | 76.77% | 23.23% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 372 | 89.78% | 10.22% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 333 | 71.47% | 28.53% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103299358 | T->C | INTERGENIC | None |