Detailed information of SNP:
|
SNP ID:
sf0103303407(Gbrowse)
Chromosome: chr01 Position: 3303407 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 54.09% | 45.91% |
| All Indica | 788 | 85.91% | 14.09% |
| All Japonica | 496 | 13.10% | 86.90% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 366 | 88.52% | 11.48% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 334 | 13.77% | 86.23% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103303407 | A->G | INTERGENIC | None |