Detailed information of SNP:
|
SNP ID:
sf0103323572(Gbrowse)
Chromosome: chr01 Position: 3323572 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1326 | 50.98% | 49.02% |
| All Indica | 719 | 18.92% | 81.08% |
| All Japonica | 489 | 88.75% | 11.25% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 333 | 16.22% | 83.78% |
| Indica II | 194 | 23.71% | 76.29% |
| Indica Intermediate | 192 | 18.75% | 81.25% |
| Temperate Japonica | 331 | 87.61% | 12.39% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103323572 | G->A | LOC_Os01g07070(LOC_Os01g07070.1) | Non-Synonymous SNP |
| sf0103323572 | G->A | LOC_Os01g07070(LOC_Os01g07070.4) | Non-Synonymous SNP |
| sf0103323572 | G->A | LOC_Os01g07070(LOC_Os01g07070.2) | Non-Synonymous SNP |
| sf0103323572 | G->A | LOC_Os01g07070(LOC_Os01g07070.3) | Non-Synonymous SNP |