Detailed information of SNP:
|
SNP ID:
sf0103369208(Gbrowse)
Chromosome: chr01 Position: 3369208 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.00% | 42.00% |
| All Indica | 799 | 35.17% | 64.83% |
| All Japonica | 497 | 87.12% | 12.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 54.13% | 45.87% |
| Indica II | 213 | 15.02% | 84.98% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 85.97% | 14.03% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103369208 | C->T | INTERGENIC | None |