Detailed information of SNP:
|
SNP ID:
sf0103372486(Gbrowse)
Chromosome: chr01 Position: 3372486 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 91.94% | 8.06% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 454 | 76.65% | 23.35% |
| Aus | 51 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 68.23% | 31.77% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 63 | 84.13% | 15.87% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103372486 | T->C | INTERGENIC | None |