Detailed information of SNP:
|
SNP ID:
sf0103380628(Gbrowse)
Chromosome: chr01 Position: 3380628 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 65.91% | 34.09% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 496 | 33.47% | 66.53% |
| Aus | 65 | 1.54% | 98.46% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 335 | 22.09% | 77.91% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103380628 | G->A | LOC_Os01g07160(LOC_Os01g07160.1) | Non-Synonymous SNP |