Detailed information of SNP:
|
SNP ID:
sf0103391222(Gbrowse)
Chromosome: chr01 Position: 3391222 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.08% | 39.92% |
| All Indica | 799 | 36.42% | 63.58% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 55.47% | 44.53% |
| Indica II | 213 | 15.02% | 84.98% |
| Indica Intermediate | 211 | 24.17% | 75.83% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103391222 | G->A | LOC_Os01g07180(LOC_Os01g07180.1) | Synonymous |