Detailed information of SNP:
|
SNP ID:
sf0103391356(Gbrowse)
Chromosome: chr01 Position: 3391356 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 65.11% | 34.89% |
| All Indica | 798 | 91.98% | 8.02% |
| All Japonica | 495 | 33.54% | 66.46% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 22.69% | 77.31% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 66 | 34.85% | 65.15% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103391356 | G->A | LOC_Os01g07180(LOC_Os01g07180.1) | Non-Synonymous SNP |