Detailed information of SNP:
|
SNP ID:
sf0103396447(Gbrowse)
Chromosome: chr01 Position: 3396447 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 55.97% | 44.03% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 10.46% | 89.54% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 11 | 9.09% | 90.91% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103396447 | G->A | LOC_Os01g07200(LOC_Os01g07200.1) | UTR_5_PRIME |