Detailed information of SNP:
|
SNP ID:
sf0103408480(Gbrowse)
Chromosome: chr01 Position: 3408480 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 63.89% | 36.11% |
| All Indica | 798 | 90.23% | 9.77% |
| All Japonica | 497 | 33.40% | 66.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 22.09% | 77.91% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103408480 | G->A | INTERGENIC | None |