Detailed information of SNP:
|
SNP ID:
sf0103408881(Gbrowse)
Chromosome: chr01 Position: 3408881 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.01% | 44.99% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 497 | 10.46% | 89.54% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103408881 | G->C | INTERGENIC | None |