Detailed information of SNP:
|
SNP ID:
sf0103415308(Gbrowse)
Chromosome: chr01 Position: 3415308 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 56.16% | 43.84% |
| All Indica | 797 | 89.59% | 10.41% |
| All Japonica | 478 | 11.30% | 88.70% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 320 | 14.37% | 85.62% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 64 | 6.25% | 93.75% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103415308 | G->A | INTERGENIC | None |